Loop IL_8YDH

3D structure

PDB id: 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
Description: E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.55 Å

Loop

Sequence: UGGGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUACCA
Length: 49 nucleotides
Bulged bases: 8YDH|1|1|U|2132, 8YDH|1|1|G|2157, 8YDH|1|1|C|2164, 8YDH|1|1|U|2172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YDH|1|1|U|2122
8YDH|1|1|G|2123
8YDH|1|1|G|2124
8YDH|1|1|G|2125
8YDH|1|1|A|2126
8YDH|1|1|G|2127
8YDH|1|1|G|2128
8YDH|1|1|C|2129
8YDH|1|1|U|2130
8YDH|1|1|U|2131
8YDH|1|1|U|2132
8YDH|1|1|G|2133
8YDH|1|1|A|2134
8YDH|1|1|A|2135
8YDH|1|1|G|2136
8YDH|1|1|U|2137
8YDH|1|1|G|2138
8YDH|1|1|U|2139
8YDH|1|1|G|2140
8YDH|1|1|G|2141
8YDH|1|1|A|2142
*
8YDH|1|1|U|2149
8YDH|1|1|C|2150
8YDH|1|1|U|2151
8YDH|1|1|G|2152
8YDH|1|1|C|2153
8YDH|1|1|A|2154
8YDH|1|1|U|2155
8YDH|1|1|G|2156
8YDH|1|1|G|2157
8YDH|1|1|A|2158
8YDH|1|1|G|2159
8YDH|1|1|C|2160
8YDH|1|1|C|2161
8YDH|1|1|G|2162
8YDH|1|1|A|2163
8YDH|1|1|C|2164
8YDH|1|1|C|2165
8YDH|1|1|U|2166
8YDH|1|1|U|2167
8YDH|1|1|G|2168
8YDH|1|1|A|2169
8YDH|1|1|A|2170
8YDH|1|1|A|2171
8YDH|1|1|U|2172
8YDH|1|1|A|2173
8YDH|1|1|C|2174
8YDH|1|1|C|2175
8YDH|1|1|A|2176

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 7: Transfer RNA; tRNA
Chain P: 30S ribosomal protein S11

IL_8YDH_080