IL_8YDH_098
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8YDH|1|1|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDH_098 not in the Motif Atlas
- Geometric match to IL_8B0X_165
- Geometric discrepancy: 0.1232
- The information below is about IL_8B0X_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8YDH|1|1|G|2737
8YDH|1|1|A|2738
8YDH|1|1|U|2739
8YDH|1|1|A|2740
8YDH|1|1|A|2741
8YDH|1|1|G|2742
*
8YDH|1|1|C|2762
8YDH|1|1|G|2763
8YDH|1|1|A|2764
8YDH|1|1|A|2765
8YDH|1|1|A|2766
8YDH|1|1|C|2767
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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