IL_8YDH_149

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_149 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.2226

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8YDH|1|3|G|953
8YDH|1|3|G|954
*
8YDH|1|3|C|1226
8YDH|1|3|A|1227
8YDH|1|3|C|1228

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

Transfer RNA; tRNA

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19