IL_8YDI_010

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_010 not in the Motif Atlas

Geometric match to IL_8B0X_074

Geometric discrepancy: 0.1296

The information below is about IL_8B0X_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8YDI|1|1|U|293
8YDI|1|1|A|294
8YDI|1|1|G|295
*
8YDI|1|1|C|343
8YDI|1|1|A|344
8YDI|1|1|A|345
8YDI|1|1|A|346
8YDI|1|1|A|347

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24