IL_8YDI_020

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8YDI|1|1|G|776, 8YDI|1|1|A|788, 8YDI|1|1|A|789, 8YDI|1|1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_020 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.1761

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8YDI|1|1|G|775
8YDI|1|1|G|776
8YDI|1|1|G|777
*
8YDI|1|1|C|787
8YDI|1|1|A|788
8YDI|1|1|A|789
8YDI|1|1|U|790
8YDI|1|1|C|791

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain s

50S ribosomal protein L22