IL_8YDI_027

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_027 not in the Motif Atlas

Geometric match to IL_8B0X_092

Geometric discrepancy: 0.1237

The information below is about IL_8B0X_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8YDI|1|1|G|864
8YDI|1|1|C|865
8YDI|1|1|A|866
8YDI|1|1|C|867
8YDI|1|1|U|868
*
8YDI|1|1|A|909
8YDI|1|1|A|910
8YDI|1|1|A|911
8YDI|1|1|C|912

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S rRNA

Chain m

50S ribosomal protein L16