IL_8YDI_039
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8YDI|1|1|A|1046
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_039 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.3088
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8YDI|1|1|C|1043
8YDI|1|1|C|1044
8YDI|1|1|C|1045
8YDI|1|1|A|1046
8YDI|1|1|G|1047
8YDI|1|1|A|1048
8YDI|1|1|C|1049
8YDI|1|1|A|1050
8YDI|1|1|G|1051
*
8YDI|1|1|U|1108
8YDI|1|1|C|1109
8YDI|1|1|G|1110
8YDI|1|1|A|1111
8YDI|1|1|G|1112
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
Coloring options: