IL_8YDI_044

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8YDI|1|1|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_044 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.0781

The information below is about IL_8B0X_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8YDI|1|1|C|1208
8YDI|1|1|U|1209
8YDI|1|1|G|1210
8YDI|1|1|C|1211
8YDI|1|1|G|1212
8YDI|1|1|A|1213
8YDI|1|1|A|1214
8YDI|1|1|G|1215
*
8YDI|1|1|U|1234
8YDI|1|1|G|1235
8YDI|1|1|G|1236
8YDI|1|1|A|1237
8YDI|1|1|G|1238

Current chains

Chain 1

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20