IL_8B0X_107

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8B0X|1|a|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_107 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0462

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8B0X|1|a|C|1210
8B0X|1|a|U|1211
8B0X|1|a|G|1212
8B0X|1|a|U|1213
8B0X|1|a|G|1214
8B0X|1|a|A|1215
8B0X|1|a|A|1216
8B0X|1|a|G|1217
*
8B0X|1|a|U|1236
8B0X|1|a|G|1237
8B0X|1|a|G|1238
8B0X|1|a|A|1239
8B0X|1|a|G|1240

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20