IL_8YDI_047

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_047 not in the Motif Atlas

Geometric match to IL_8B0X_112

Geometric discrepancy: 0.1429

The information below is about IL_8B0X_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YDI|1|1|C|1357
8YDI|1|1|G|1358
8YDI|1|1|A|1359
8YDI|1|1|G|1360
8YDI|1|1|G|1361
*
8YDI|1|1|C|1370
8YDI|1|1|G|1371
8YDI|1|1|U|1372
8YDI|1|1|A|1373
8YDI|1|1|G|1374

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28