IL_8YDI_049

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8YDI|1|1|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_049 not in the Motif Atlas

Geometric match to IL_8B0X_114

Geometric discrepancy: 0.1015

The information below is about IL_8B0X_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8YDI|1|1|C|1417
8YDI|1|1|G|1418
8YDI|1|1|A|1419
8YDI|1|1|A|1420
8YDI|1|1|G|1421
*
8YDI|1|1|C|1577
8YDI|1|1|U|1578
8YDI|1|1|A|1579
8YDI|1|1|A|1580
8YDI|1|1|G|1581

Current chains

Chain 1

23S rRNA

Nearby chains