IL_8YDI_054

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_054 not in the Motif Atlas

Geometric match to IL_8B0X_119

Geometric discrepancy: 0.1754

The information below is about IL_8B0X_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8YDI|1|1|U|1474
8YDI|1|1|G|1475
8YDI|1|1|U|1476
8YDI|1|1|A|1477
8YDI|1|1|G|1478
*
8YDI|1|1|U|1513
8YDI|1|1|G|1514
8YDI|1|1|A|1515
8YDI|1|1|G|1516
8YDI|1|1|G|1517

Current chains

Chain 1

23S rRNA

Nearby chains