IL_8YDI_063

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_063 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.1586

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8YDI|1|1|U|1720
8YDI|1|1|G|1721
8YDI|1|1|A|1722
8YDI|1|1|G|1723
8YDI|1|1|G|1724
*
8YDI|1|1|U|1736
8YDI|1|1|G|1737
8YDI|1|1|G|1738
8YDI|1|1|A|1739
8YDI|1|1|G|1740

Current chains

Chain 1

23S rRNA

Nearby chains