IL_8YDI_067

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8YDI|1|1|A|1899, 8YDI|1|1|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_067 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.207

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8YDI|1|1|U|1841
8YDI|1|1|G|1842
*
8YDI|1|1|U|1898
8YDI|1|1|A|1899
8YDI|1|1|A|1900
8YDI|1|1|A|1901

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

16S rRNA

Chain b

50S ribosomal protein L2