IL_8YDI_069

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDI|1|1|U|1851
8YDI|1|1|U|1852
8YDI|1|1|A|1853
8YDI|1|1|A|1854
8YDI|1|1|U|1855
8YDI|1|1|U|1856
8YDI|1|1|G|1857
8YDI|1|1|A|1858
8YDI|1|1|U|1859
8YDI|1|1|G|1860
*
8YDI|1|1|U|1882
8YDI|1|1|U|1883
8YDI|1|1|G|1884
8YDI|1|1|A|1885
8YDI|1|1|U|1886
8YDI|1|1|C|1887
8YDI|1|1|G|1888
8YDI|1|1|A|1889
8YDI|1|1|A|1890
8YDI|1|1|G|1891

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA