IL_8YDI_076

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8YDI|1|1|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_076 not in the Motif Atlas

Geometric match to IL_8B0X_144

Geometric discrepancy: 0.1327

The information below is about IL_8B0X_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8YDI|1|1|U|2081
8YDI|1|1|A|2082
8YDI|1|1|G|2083
*
8YDI|1|1|U|2236
8YDI|1|1|G|2237
8YDI|1|1|G|2238
8YDI|1|1|G|2239

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28