IL_8YDI_087

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_087 not in the Motif Atlas

Geometric match to IL_8B0X_153

Geometric discrepancy: 0.1171

The information below is about IL_8B0X_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8YDI|1|1|C|2466
8YDI|1|1|C|2467
8YDI|1|1|A|2468
8YDI|1|1|A|2469
8YDI|1|1|G|2470
*
8YDI|1|1|C|2480
8YDI|1|1|G|2481
8YDI|1|1|A|2482
8YDI|1|1|C|2483
8YDI|1|1|G|2484

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

tRNA(Phe)

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16