IL_8YDI_089

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8YDI|1|1|G|2576, 8YDI|1|1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_089 not in the Motif Atlas

Geometric match to IL_8B0X_155

Geometric discrepancy: 0.1593

The information below is about IL_8B0X_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8YDI|1|1|C|2510
8YDI|1|1|U|2511
8YDI|1|1|C|2512
*
8YDI|1|1|G|2574
8YDI|1|1|C|2575
8YDI|1|1|G|2576
8YDI|1|1|A|2577
8YDI|1|1|G|2578

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3