IL_8YDI_093
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8YDI|1|1|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_093 not in the Motif Atlas
- Geometric match to IL_8B0X_160
- Geometric discrepancy: 0.1042
- The information below is about IL_8B0X_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8YDI|1|1|C|2636
8YDI|1|1|U|2637
8YDI|1|1|G|2638
8YDI|1|1|A|2639
8YDI|1|1|G|2640
*
8YDI|1|1|C|2774
8YDI|1|1|G|2775
8YDI|1|1|A|2776
8YDI|1|1|G|2777
8YDI|1|1|A|2778
8YDI|1|1|U|2779
8YDI|1|1|G|2780
8YDI|1|1|A|2781
8YDI|1|1|G|2782
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
Coloring options: