IL_8YDI_100

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_100 not in the Motif Atlas

Geometric match to IL_4WF9_106

Geometric discrepancy: 0.1228

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8YDI|1|1|G|2838
8YDI|1|1|G|2839
*
8YDI|1|1|U|2878
8YDI|1|1|A|2879
8YDI|1|1|C|2880

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17