IL_8YDI_104
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_104 not in the Motif Atlas
- Geometric match to IL_8B0X_172
- Geometric discrepancy: 0.1146
- The information below is about IL_8B0X_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YDI|1|2|G|23
8YDI|1|2|G|24
8YDI|1|2|U|25
8YDI|1|2|C|26
8YDI|1|2|C|27
8YDI|1|2|C|28
*
8YDI|1|2|G|56
8YDI|1|2|A|57
8YDI|1|2|A|58
8YDI|1|2|A|59
8YDI|1|2|C|60
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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