IL_8YDI_107

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_107 not in the Motif Atlas

Geometric match to IL_8B0X_175

Geometric discrepancy: 0.0722

The information below is about IL_8B0X_175

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71138.1

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YDI|1|2|C|71
8YDI|1|2|G|72
8YDI|1|2|A|73
8YDI|1|2|U|74
8YDI|1|2|G|75
8YDI|1|2|G|76
8YDI|1|2|U|77
8YDI|1|2|A|78
8YDI|1|2|G|79
*
8YDI|1|2|C|97
8YDI|1|2|G|98
8YDI|1|2|A|99
8YDI|1|2|G|100
8YDI|1|2|A|101
8YDI|1|2|G|102
8YDI|1|2|U|103
8YDI|1|2|A|104
8YDI|1|2|G|105

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

50S ribosomal protein L16

Chain v

50S ribosomal protein L25