IL_8YDI_148
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 8YDI|1|3|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_148 not in the Motif Atlas
- Geometric match to IL_4LFB_037
- Geometric discrepancy: 0.3865
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_61370.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8YDI|1|3|G|933
8YDI|1|3|C|934
8YDI|1|3|A|935
*
8YDI|1|3|U|1380
8YDI|1|3|U|1381
8YDI|1|3|C|1382
8YDI|1|3|C|1383
8YDI|1|3|C|1384
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
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