IL_8YDI_149
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_149 not in the Motif Atlas
- Geometric match to IL_7A0S_028
- Geometric discrepancy: 0.2226
- The information below is about IL_7A0S_028
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 58
Unit IDs
8YDI|1|3|G|953
8YDI|1|3|G|954
*
8YDI|1|3|C|1226
8YDI|1|3|A|1227
8YDI|1|3|C|1228
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 5
- tRNA(Phe)
- Chain 6
- tRNA(fMet)
- Chain R
- 30S ribosomal protein S13
- Chain X
- 30S ribosomal protein S19
Coloring options: