IL_8YDI_164

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_164 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.1176

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8YDI|1|3|C|1303
8YDI|1|3|G|1304
8YDI|1|3|G|1305
8YDI|1|3|A|1306
8YDI|1|3|U|1307
8YDI|1|3|U|1308
*
8YDI|1|3|A|1329
8YDI|1|3|U|1330
8YDI|1|3|G|1331
8YDI|1|3|A|1332
8YDI|1|3|A|1333
8YDI|1|3|G|1334

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19