IL_8YDI_170

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_170 not in the Motif Atlas

Geometric match to IL_8B0X_061

Geometric discrepancy: 0.083

The information below is about IL_8B0X_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8YDI|1|3|G|1416
8YDI|1|3|G|1417
8YDI|1|3|A|1418
8YDI|1|3|G|1419
*
8YDI|1|3|U|1481
8YDI|1|3|G|1482
8YDI|1|3|A|1483
8YDI|1|3|C|1484

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q

30S ribosomal protein S12