IL_8YDJ_004
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 8YDJ|1|1|U|100, 8YDJ|1|1|U|102
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_004 not in the Motif Atlas
- Geometric match to IL_8B0X_068
- Geometric discrepancy: 0.2623
- The information below is about IL_8B0X_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28245.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8YDJ|1|1|G|81
8YDJ|1|1|U|82
8YDJ|1|1|A|83
8YDJ|1|1|A|84
8YDJ|1|1|G|85
*
8YDJ|1|1|C|97
8YDJ|1|1|G|98
8YDJ|1|1|U|99
8YDJ|1|1|U|100
8YDJ|1|1|A|101
8YDJ|1|1|U|102
8YDJ|1|1|A|103
8YDJ|1|1|A|104
8YDJ|1|1|C|105
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain u
- 50S ribosomal protein L24
- Chain y
- 50S ribosomal protein L29
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