IL_8YDJ_019
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8YDJ|1|1|G|776, 8YDJ|1|1|A|788, 8YDJ|1|1|A|789, 8YDJ|1|1|U|790
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_019 not in the Motif Atlas
- Geometric match to IL_8B0X_085
- Geometric discrepancy: 0.176
- The information below is about IL_8B0X_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8YDJ|1|1|G|775
8YDJ|1|1|G|776
8YDJ|1|1|G|777
*
8YDJ|1|1|C|787
8YDJ|1|1|A|788
8YDJ|1|1|A|789
8YDJ|1|1|U|790
8YDJ|1|1|C|791
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L4
- Chain s
- 50S ribosomal protein L22
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