IL_8YDJ_024
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_024 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.109
- The information below is about IL_8B0X_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YDJ|1|1|G|856
8YDJ|1|1|G|857
8YDJ|1|1|G|858
8YDJ|1|1|G|859
8YDJ|1|1|U|860
8YDJ|1|1|A|861
8YDJ|1|1|G|862
*
8YDJ|1|1|C|915
8YDJ|1|1|G|916
8YDJ|1|1|A|917
8YDJ|1|1|A|918
8YDJ|1|1|U|919
8YDJ|1|1|A|920
8YDJ|1|1|C|921
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
- Chain z
- 50S ribosomal protein L30
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