IL_8YDJ_031
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8YDJ|1|1|A|1156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_031 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2134
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8YDJ|1|1|G|997
8YDJ|1|1|C|998
8YDJ|1|1|U|999
8YDJ|1|1|A|1000
8YDJ|1|1|A|1001
8YDJ|1|1|G|1002
*
8YDJ|1|1|C|1153
8YDJ|1|1|G|1154
8YDJ|1|1|A|1155
8YDJ|1|1|A|1156
8YDJ|1|1|G|1157
8YDJ|1|1|C|1158
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L30
Coloring options: