IL_8YDJ_035
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8YDJ|1|1|A|1127, 8YDJ|1|1|U|1130
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_035 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.1352
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8YDJ|1|1|G|1024
8YDJ|1|1|G|1025
8YDJ|1|1|G|1026
8YDJ|1|1|A|1027
8YDJ|1|1|A|1028
8YDJ|1|1|A|1029
8YDJ|1|1|C|1030
*
8YDJ|1|1|G|1124
8YDJ|1|1|G|1125
8YDJ|1|1|A|1126
8YDJ|1|1|A|1127
8YDJ|1|1|G|1128
8YDJ|1|1|A|1129
8YDJ|1|1|U|1130
8YDJ|1|1|G|1131
8YDJ|1|1|U|1132
8YDJ|1|1|A|1133
8YDJ|1|1|A|1134
8YDJ|1|1|C|1135
8YDJ|1|1|G|1136
8YDJ|1|1|G|1137
8YDJ|1|1|G|1138
8YDJ|1|1|G|1139
8YDJ|1|1|C|1140
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L36
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain m
- 50S ribosomal protein L16
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