IL_8YDJ_043

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_043 not in the Motif Atlas

Geometric match to IL_8B0X_108

Geometric discrepancy: 0.1366

The information below is about IL_8B0X_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8YDJ|1|1|A|1262
8YDJ|1|1|U|1263
8YDJ|1|1|A|1264
8YDJ|1|1|A|1265
8YDJ|1|1|G|1266
8YDJ|1|1|U|1267
8YDJ|1|1|A|1268
8YDJ|1|1|A|1269
*
8YDJ|1|1|U|2011
8YDJ|1|1|G|2012
8YDJ|1|1|A|2013
8YDJ|1|1|A|2014
8YDJ|1|1|A|2015
8YDJ|1|1|U|2016
8YDJ|1|1|U|2017

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain d

50S ribosomal protein L4

Chain s

50S ribosomal protein L22