IL_8YDJ_061

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8YDJ|1|1|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_061 not in the Motif Atlas

Geometric match to IL_9E6Q_065

Geometric discrepancy: 0.1248

The information below is about IL_9E6Q_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8YDJ|1|1|A|1669
8YDJ|1|1|C|1670
8YDJ|1|1|U|1671
8YDJ|1|1|A|1672
8YDJ|1|1|G|1673
8YDJ|1|1|G|1674
*
8YDJ|1|1|C|1990
8YDJ|1|1|U|1991
8YDJ|1|1|G|1992
8YDJ|1|1|U|1993

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14