IL_9E6Q_065

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

ACU(OMC)GG*CUGU

Length

10 nucleotides

Bulged bases

9E6Q|1|1|G|2113

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|A|1813
9E6Q|1|1|C|1814
9E6Q|1|1|U|1815
9E6Q|1|1|OMC|1816
9E6Q|1|1|G|1817
9E6Q|1|1|G|1818
*
9E6Q|1|1|C|2111
9E6Q|1|1|U|2112
9E6Q|1|1|G|2113
9E6Q|1|1|U|2114

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AI

Large ribosomal subunit protein uL14