IL_8YDJ_064

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_064 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.189

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8YDJ|1|1|U|1720
8YDJ|1|1|G|1721
8YDJ|1|1|A|1722
8YDJ|1|1|G|1723
8YDJ|1|1|G|1724
*
8YDJ|1|1|U|1736
8YDJ|1|1|G|1737
8YDJ|1|1|G|1738
8YDJ|1|1|A|1739
8YDJ|1|1|G|1740

Current chains

Chain 1

23S rRNA

Nearby chains