IL_8YDJ_066

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8YDJ|1|1|A|1801, 8YDJ|1|1|C|1816, 8YDJ|1|1|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_066 not in the Motif Atlas

Geometric match to IL_8B0X_132

Geometric discrepancy: 0.1254

The information below is about IL_8B0X_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8YDJ|1|1|U|1798
8YDJ|1|1|G|1799
8YDJ|1|1|C|1800
8YDJ|1|1|A|1801
8YDJ|1|1|A|1802
8YDJ|1|1|A|1803
8YDJ|1|1|C|1804
*
8YDJ|1|1|G|1813
8YDJ|1|1|G|1814
8YDJ|1|1|A|1815
8YDJ|1|1|C|1816
8YDJ|1|1|G|1817
8YDJ|1|1|U|1818
8YDJ|1|1|A|1819
8YDJ|1|1|U|1820
8YDJ|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2