IL_8YDJ_070
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|1|U|1851
8YDJ|1|1|U|1852
8YDJ|1|1|A|1853
8YDJ|1|1|A|1854
8YDJ|1|1|U|1855
8YDJ|1|1|U|1856
8YDJ|1|1|G|1857
8YDJ|1|1|A|1858
8YDJ|1|1|U|1859
8YDJ|1|1|G|1860
*
8YDJ|1|1|U|1882
8YDJ|1|1|U|1883
8YDJ|1|1|G|1884
8YDJ|1|1|A|1885
8YDJ|1|1|U|1886
8YDJ|1|1|C|1887
8YDJ|1|1|G|1888
8YDJ|1|1|A|1889
8YDJ|1|1|A|1890
8YDJ|1|1|G|1891
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain a
- Large ribosomal subunit protein uL1
Coloring options: