IL_8YDJ_090

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_090 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.2637

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YDJ|1|1|C|2466
8YDJ|1|1|C|2467
8YDJ|1|1|A|2468
8YDJ|1|1|A|2469
8YDJ|1|1|G|2470
*
8YDJ|1|1|C|2480
8YDJ|1|1|G|2481
8YDJ|1|1|A|2482
8YDJ|1|1|C|2483
8YDJ|1|1|G|2484

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16