IL_8YDJ_099

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

8YDJ|1|1|C|2712, 8YDJ|1|1|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_099 not in the Motif Atlas

Geometric match to IL_8B0X_164

Geometric discrepancy: 0.143

The information below is about IL_8B0X_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8YDJ|1|1|U|2695
8YDJ|1|1|U|2696
*
8YDJ|1|1|A|2711
8YDJ|1|1|C|2712
8YDJ|1|1|U|2713
8YDJ|1|1|G|2714

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19