IL_8YDJ_116

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

8YDJ|1|3|A|130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_116 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.2124

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8YDJ|1|3|G|128
8YDJ|1|3|A|129
8YDJ|1|3|A|130
8YDJ|1|3|A|131
*
8YDJ|1|3|U|231
8YDJ|1|3|G|232
8YDJ|1|3|C|233

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17

Chain Y

30S ribosomal protein S20