IL_8YDJ_121
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8YDJ|1|3|U|244, 8YDJ|1|3|A|279, 8YDJ|1|3|C|280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_121 not in the Motif Atlas
- Geometric match to IL_8B0X_013
- Geometric discrepancy: 0.2752
- The information below is about IL_8B0X_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YDJ|1|3|G|242
8YDJ|1|3|A|243
8YDJ|1|3|U|244
8YDJ|1|3|U|245
8YDJ|1|3|A|246
8YDJ|1|3|G|247
*
8YDJ|1|3|C|277
8YDJ|1|3|G|278
8YDJ|1|3|A|279
8YDJ|1|3|C|280
8YDJ|1|3|G|281
8YDJ|1|3|A|282
8YDJ|1|3|U|283
8YDJ|1|3|C|284
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
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