IL_8YDJ_127

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_127 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.3569

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8YDJ|1|3|C|440
8YDJ|1|3|A|441
8YDJ|1|3|G|442
*
8YDJ|1|3|C|492
8YDJ|1|3|A|493
8YDJ|1|3|G|494
8YDJ|1|3|A|495
8YDJ|1|3|A|496
8YDJ|1|3|G|497

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4