IL_8YDJ_139
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDJ_139 not in the Motif Atlas
- Geometric match to IL_8B0X_176
- Geometric discrepancy: 0.2403
- The information below is about IL_8B0X_176
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8YDJ|1|3|A|673
8YDJ|1|3|G|674
8YDJ|1|3|A|675
8YDJ|1|3|A|676
8YDJ|1|3|U|677
*
8YDJ|1|3|G|713
8YDJ|1|3|G|714
8YDJ|1|3|A|715
8YDJ|1|3|A|716
8YDJ|1|3|U|717
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S6, fully modified isoform
- Chain P
- 30S ribosomal protein S11
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
- Chain b
- 50S ribosomal protein L2
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