IL_8YDJ_155

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|3|G|1124
8YDJ|1|3|U|1125
8YDJ|1|3|U|1126
8YDJ|1|3|G|1127
8YDJ|1|3|C|1128
*
8YDJ|1|3|G|1144
8YDJ|1|3|A|1145
8YDJ|1|3|A|1146
8YDJ|1|3|C|1147
8YDJ|1|3|U|1148
8YDJ|1|3|C|1149

Current chains

Chain 3

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10