IL_8YLD_011
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 8YLD|1|2|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_011 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.1964
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8YLD|1|2|U|144
8YLD|1|2|A|145
8YLD|1|2|U|146
8YLD|1|2|A|147
8YLD|1|2|A|148
8YLD|1|2|C|149
*
8YLD|1|2|G|165
8YLD|1|2|C|166
8YLD|1|2|U|167
8YLD|1|2|A|168
8YLD|1|2|A|169
8YLD|1|2|U|170
8YLD|1|2|A|171
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain Y
- Large ribosomal subunit protein eL24A
Coloring options: