IL_8YLD_029

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_029 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.4077

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8YLD|1|2|A|550
8YLD|1|2|G|551
8YLD|1|2|G|552
8YLD|1|2|G|553
8YLD|1|2|C|554
8YLD|1|2|A|555
8YLD|1|2|A|556
8YLD|1|2|G|557
*
8YLD|1|2|C|587
8YLD|1|2|U|588

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A