IL_8YLD_030

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8YLD|1|2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_030 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.2746

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8YLD|1|2|G|557
8YLD|1|2|U|558
8YLD|1|2|C|559
*
8YLD|1|2|G|586
8YLD|1|2|C|587

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain Sg

Small ribosomal subunit protein eS30A