IL_8YLD_031
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8YLD|1|2|A|579, 8YLD|1|2|U|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_031 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.2214
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YLD|1|2|G|562
8YLD|1|2|U|563
8YLD|1|2|G|564
8YLD|1|2|C|565
8YLD|1|2|C|566
8YLD|1|2|A|567
8YLD|1|2|G|568
*
8YLD|1|2|C|575
8YLD|1|2|G|576
8YLD|1|2|G|577
8YLD|1|2|U|578
8YLD|1|2|A|579
8YLD|1|2|A|580
8YLD|1|2|U|581
8YLD|1|2|U|582
8YLD|1|2|C|583
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
- Chain s
- Transfer RNA; tRNA
- Chain x
- Elongation factor 2
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