IL_8YLD_048

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_048 not in the Motif Atlas

Geometric match to IL_8VTW_052

Geometric discrepancy: 0.2266

The information below is about IL_8VTW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22281.1

Basepair signature

cWW-L-R-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8YLD|1|2|C|990
8YLD|1|2|G|991
8YLD|1|2|A|992
8YLD|1|2|A|993
8YLD|1|2|G|994
*
8YLD|1|2|C|1010
8YLD|1|2|G|1011
8YLD|1|2|U|1012
8YLD|1|2|A|1013
8YLD|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain D

Large ribosomal subunit protein uL2A

Chain SZ

Small ribosomal subunit protein uS11B