IL_8YLD_050
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_050 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.1632
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8YLD|1|2|G|1041
8YLD|1|2|G|1042
8YLD|1|2|A|1043
8YLD|1|2|U|1044
*
8YLD|1|2|G|1074
8YLD|1|2|C|1075
8YLD|1|2|A|1076
8YLD|1|2|C|1077
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Se
- Small ribosomal subunit protein eS26A
Coloring options: